STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2247FeS assembly scaffold SufA; TIGRFAM: iron-sulfur cluster assembly accessory protein; FeS assembly scaffold SufA; PFAM: HesB/YadR/YfhF-family protein; KEGG: bmb:BruAb1_0948 HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family. (126 aa)    
Predicted Functional Partners:
Oant_2157
PFAM: nitrogen-fixing NifU domain protein; KEGG: bmb:BruAb1_1079 NifU-related protein.
  
  
 0.961
Oant_2257
PFAM: aminotransferase class V; KEGG: bmb:BruAb1_0939 cysteine desulfurase, hypothetical.
 
  
 0.896
Oant_2255
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bmb:BruAb1_0940 hypothetical protein.
  
 
 0.861
Oant_2112
PFAM: ferredoxin; KEGG: bms:BR1026 ferredoxin, 2Fe-2S.
 
 
 0.860
Oant_2248
PFAM: TfoX domain protein; KEGG: rle:RL2596 putative TfoX family protein.
       0.733
Oant_2391
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: bms:BR0835 glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.731
Oant_4356
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ret:RHE_CH03364 hypothetical protein.
 
  
 0.717
Oant_4173
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bmb:BruAb2_1057 RfF2 family protein.
 
  
 0.711
Oant_1731
PFAM: heat shock protein DnaJ domain protein; KEGG: bms:BR1445 DnaJ domain protein.
  
 
 0.710
Oant_0153
Scaffold protein Nfu/NifU; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: bmb:BruAb1_0137 NifU-related protein.
 
 
 0.706
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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