STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2252TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bms:BR0934 aminotransferase, class V; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (414 aa)    
Predicted Functional Partners:
Oant_2685
PFAM: Fe-S metabolism associated SufE; KEGG: bmb:BruAb1_0596 hypothetical protein.
 
 0.991
Oant_2254
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bms:BR0932 ABC transporter, ATP-binding protein.
 
  
 0.982
Oant_2253
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bms:BR0933 hypothetical protein.
 
 
 0.980
Oant_2157
PFAM: nitrogen-fixing NifU domain protein; KEGG: bmb:BruAb1_1079 NifU-related protein.
 
 
 0.977
Oant_2255
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bmb:BruAb1_0940 hypothetical protein.
 
 
 0.973
Oant_2251
TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: bms:BR0935 hypothetical protein.
 
  
 0.938
Oant_1664
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bms:BR1499 thioredoxin reductase.
 
 
 0.919
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
   
 0.914
Oant_2113
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rco:RC0637 thioredoxin reductase.
  
 
 0.906
Oant_1324
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb2_0999 endonuclease/exonuclease/phosphatase family protein.
    
   0.800
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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