STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2269PFAM: aminotransferase class I and II; KEGG: bms:BR0911 aminotransferase, class I. (412 aa)    
Predicted Functional Partners:
Oant_2270
PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: bms:BR0910 hypothetical protein.
       0.553
Oant_4277
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bms:BRA0054 glutamate synthase, large subunit.
  
  
 0.543
Oant_2271
PFAM: DSBA oxidoreductase; KEGG: bms:BR0909 outer membrane protein, putative.
  
    0.457
Oant_4245
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bmb:BruAb2_0099 decarboxylase, ornithine/DAP/arginine decarboxylase family 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.414
Oant_0158
PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: rle:RL0407 putative NADP-dependent malate dehydrogenase.
  
 
 0.400
Oant_2100
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: bmb:BruAb1_1022 MaeB, NADP-dependent malic enzyme.
  
 
 0.400
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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