STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2399KEGG: bmb:BruAb1_0840 hypothetical protein. (65 aa)    
Predicted Functional Partners:
Oant_1245
PFAM: protein of unknown function DUF1328; KEGG: bmb:BruAb1_1643 hypothetical protein.
  
    0.717
Oant_1698
PFAM: CsbD family protein; KEGG: sme:SMb21330 hypothetical protein with amino acid permeases signature; Belongs to the UPF0337 (CsbD) family.
   
    0.701
Oant_2400
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: mlo:mlr2600 hypothetical protein.
       0.610
Oant_2516
Putative transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: bmb:BruAb1_0794 hypothetical protein.
   
    0.400
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.