STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2816TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase FGGY; KEGG: bmb:BruAb2_0911 ribitol kinase. (538 aa)    
Predicted Functional Partners:
Oant_2815
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmb:BruAb2_0912 ribitol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.985
Oant_2376
PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: bms:BR0850 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.920
Oant_2368
PFAM: PfkB domain protein; KEGG: bms:BR0858 2-dehydro-3-deoxygluconokinase, putative.
   
 
 0.806
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
Oant_4233
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
  0.800
Oant_2814
PFAM: inner-membrane translocator; KEGG: bmb:BruAb2_0913 sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.770
Oant_2813
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEII0982 galactoside transport ATP-binding protein MglA.
 
    0.750
Oant_2812
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bmb:BruAb2_0915 hypothetical sugar ABC transporter periplasmic sugar-binding protein.
 
     0.640
Oant_2369
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
   
 0.471
Oant_2811
PFAM: regulatory protein LacI; KEGG: sme:SMb20483 putative catabolite repressor protein.
 
  
 0.465
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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