STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2853PFAM: aminotransferase class-III; KEGG: mlo:mll0107 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)    
Predicted Functional Partners:
Oant_2854
PFAM: protein of unknown function DUF849; KEGG: mlo:mll0106 hypothetical protein.
 
     0.866
Oant_2852
KEGG: mlo:mll0108 hypothetical protein.
 
     0.810
Oant_2847
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sil:SPO2010 transcriptional regulator, LysR family.
 
     0.808
Oant_2851
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2357 glutamine ABC transporter, ATP-binding protein.
  
   0.765
Oant_2856
PFAM: histone deacetylase superfamily; KEGG: mlo:mll0103 acetylpolyamine aminohydrolase.
 
     0.748
Oant_2850
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2358 amino acid ABC transporter.
       0.740
Oant_2849
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2359 amino acid ABC transporter, permease protein.
       0.720
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.684
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.655
Oant_2848
PFAM: extracellular solute-binding protein family 3; KEGG: pfl:PFL_2360 amino acid ABC transporter, periplasmic amino acid-binding protein.
 
    0.618
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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