STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3000PFAM: regulatory protein MarR; KEGG: bme:BMEII0530 transcriptional regulator, MarR family. (145 aa)    
Predicted Functional Partners:
Oant_3001
PFAM: Fusaric acid resistance protein conserved region; KEGG: bms:BRA0760 hypothetical protein.
 
   
 0.837
Oant_3003
PFAM: secretion protein HlyD family protein; KEGG: bmb:BruAb2_0474 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.766
Oant_3002
PFAM: protein of unknown function DUF1656; KEGG: bmb:BruAb2_0473 hypothetical protein.
 
     0.696
Oant_2999
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
    0.519
Oant_1375
PFAM: regulatory protein MarR; KEGG: mes:Meso_2845 transcriptional regulator, MarR family.
  
     0.492
Oant_3004
PFAM: glutamine amidotransferase class-I; KEGG: mlo:mlr6905 hypothetical protein.
       0.430
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.