STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3003PFAM: secretion protein HlyD family protein; KEGG: bmb:BruAb2_0474 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (288 aa)    
Predicted Functional Partners:
Oant_3001
PFAM: Fusaric acid resistance protein conserved region; KEGG: bms:BRA0760 hypothetical protein.
 
  
 0.946
Oant_3002
PFAM: protein of unknown function DUF1656; KEGG: bmb:BruAb2_0473 hypothetical protein.
 
     0.922
Oant_3000
PFAM: regulatory protein MarR; KEGG: bme:BMEII0530 transcriptional regulator, MarR family.
 
  
 0.766
Oant_3560
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpb:RPB_2240 RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.700
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.665
macB-2
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.665
Oant_2243
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bmb:BruAb1_0954 outer membrane efflux family protein.
 
 
 0.646
Oant_3991
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_3278 drug resistance transporter EmrB/QacA subfamily.
  
 
 0.587
Oant_3004
PFAM: glutamine amidotransferase class-I; KEGG: mlo:mlr6905 hypothetical protein.
       0.574
Oant_1280
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bme:BMEII0280 multidrug resistance protein B.
  
 
 0.557
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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