STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apnLConserved hypothetical protein; Involved in catabolism of D-apiose. Hydrolyzes D- apionolactone to D-apionate. (609 aa)    
Predicted Functional Partners:
Oant_3060
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:pRL120389 putative GFO/IDH/MocA family oxidoreductase.
 
  
  0.967
Oant_3063
KEGG: sme:SMb20350 hypothetical protein.
 
     0.903
Oant_3065
KEGG: rle:pRL120394 hypothetical protein.
 
     0.866
Oant_3066
PFAM: type III effector Hrp-dependent outers; KEGG: ret:RHE_PF00041 hypothetical protein.
 
     0.830
Oant_3061
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMb20352 probable sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.808
Oant_3062
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00035 probable ribose ABC transporter, ATP-binding protein.
 
     0.805
Oant_3067
PFAM: ribulose bisphosphate carboxylase large chain; KEGG: ret:RHE_PF00042 ribulose bisphosphate carboxylaseoxygenase, large subunit protein; Belongs to the RuBisCO large chain family.
 
     0.805
Oant_3064
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20349 probable ABC transporter sugar-binding protein.
 
     0.718
Oant_3068
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PF00043 probable transcriptional regulator protein, GntR family.
 
     0.684
Oant_3909
KEGG: atc:AGR_L_1638 putative simple sugar transport system substrate-binding protein.
  
     0.546
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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