STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3117KEGG: bms:BRA0291 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Oant_3115
PFAM: peptidase U32; KEGG: bmb:BruAb2_0892 hypothetical protease.
 
  
 0.966
Oant_3116
PFAM: peptidase U32; KEGG: bmb:BruAb2_0891 peptidase, U32 family.
 
  
 0.965
Oant_2901
PFAM: NnrS family protein; KEGG: bms:BRA0283 putative uncharacterized protein involved in response to NO.
 
     0.693
Oant_3118
TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: bms:BRA0292 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
 
     0.674
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
     0.645
Oant_4342
PFAM: NosL family protein; KEGG: bmb:BruAb2_0901 hypothetical protein disulfide isomerase NosL.
 
    0.574
Oant_4347
PFAM: FMN-binding domain protein; KEGG: bmb:BruAb2_0906 hypothetical transcriptional regulator NosR.
 
    0.571
Oant_4345
PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: bmb:BruAb2_0904 NosD, copper ABC transporter, periplasmic copper-binding protein.
 
    0.481
Oant_4341
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
  
     0.471
nosZ
Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
 
    0.457
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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