STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3209Putative transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: net:Neut_0085 transcriptional regulator, MerR family protein. (138 aa)    
Predicted Functional Partners:
Oant_3208
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nwi:Nwi_3134 heavy metal translocating P-type ATPase.
 
  
 0.662
Oant_3207
KEGG: mes:Meso_4214 Co/Zn/Cd efflux system component.
 
   
 0.620
Oant_4036
Putative transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bms:BRA0820 transcriptional regulator, MerR family.
  
     0.559
Oant_3206
PFAM: protein of unknown function DUF461; KEGG: mes:Meso_4130 protein of unknown function DUF461.
   
   0.481
Oant_3157
PFAM: Mercuric transport protein MerT; KEGG: sal:Sala_2510 mercuric transport protein MerT.
 
  
 0.440
Oant_3204
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: net:Neut_0054 cytochrome c biogenesis protein, transmembrane region.
       0.435
Oant_3205
PFAM: electron transport protein SCO1/SenC; KEGG: mes:Meso_4131 electron transport protein SCO1/SenC.
       0.435
lspA-2
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.411
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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