STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3226TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ajs:Ajs_1370 cation diffusion facilitator family transporter. (352 aa)    
Predicted Functional Partners:
Oant_3225
PFAM: regulatory protein ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family.
 
   
 0.827
Oant_3227
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3887 transmembrane efflux protein.
 
     0.547
Oant_3223
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family.
 
     0.528
Oant_3207
KEGG: mes:Meso_4214 Co/Zn/Cd efflux system component.
 
     0.509
Oant_3224
Hypothetical protein.
       0.438
Oant_2127
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro05032 possible oxidoreductase.
  
    0.402
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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