STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3261PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sme:SMa2412 RhrA transcriptional activator. (339 aa)    
Predicted Functional Partners:
Oant_2758
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bms:BR0550 transcriptional regulator, AraC family.
  
     0.678
Oant_4409
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bms:BRA0550 transcriptional regulator, AraC family.
  
     0.603
Oant_3696
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bms:BRA0628 transcriptional regulator, AraC family.
  
     0.597
Oant_0400
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bme:BMEI1615 transcriptional regulator, AraC family.
 
 
 0.594
Oant_2921
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: mlo:mll5038 transcription regulator.
 
 
 0.574
Oant_0066
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bch:Bcen2424_5008 transcriptional regulator, AraC family.
  
     0.547
Oant_2618
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: ret:RHE_PF00313 probable transcriptional regulator protein, AraC family.
 
 
 0.449
Oant_1865
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bmb:BruAb1_1319 transcriptional regulator, AraC family.
 
 
 0.441
Oant_3475
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sme:SMc01610 putative transcription regulator protein.
  
     0.409
Oant_3259
TIGRFAM: Siderophore transporter RhtX/FptX family; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMa2337 putative transmembrane transport protein.
 
     0.405
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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