STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3264PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc03132 putative oxidoreductase protein. (427 aa)    
Predicted Functional Partners:
Oant_3937
PFAM: FAD dependent oxidoreductase; KEGG: bms:BRA0770 D-amino acid oxidase family protein.
  
  
 
0.925
Oant_0303
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: bms:BR0231 sarcosine oxidase, alpha subunit.
 
 
 0.883
Oant_3263
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03133 putative amino-acid transport system permease ABC transporter protein.
       0.758
Oant_3936
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: bms:BRA0768 glutamine synthetase family protein.
 
  
 0.743
Oant_3262
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMa0257 probable methylamine.
 
 
 0.702
Oant_3265
PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc03131 putative amino acid-binding periplasmic ABC transporter protein; Belongs to the bacterial solute-binding protein 3 family.
  
    0.585
Oant_1378
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: bme:BMEII0314 anthranilate synthase component II.
 
  
 0.515
Oant_1442
PFAM: aminotransferase class-III; KEGG: bms:BRA0926 omega-amino acid--pyruvate aminotransferase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.468
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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