STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3286PFAM: protein of unknown function DUF343; KEGG: bmb:BruAb2_0341 hypothetical protein; Belongs to the UPF0434 family. (64 aa)    
Predicted Functional Partners:
Oant_3285
PFAM: peptidase S16 lon domain protein; KEGG: bmb:BruAb2_0340 hypothetical ATP-dependent protease La.
       0.755
Oant_3284
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bms:BRA0893 thioredoxin.
       0.486
Oant_3283
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bms:BRA0894 hypothetical protein.
 
     0.435
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
    0.432
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
       0.426
prmC
Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
 
 0.413
Oant_2230
PFAM: protein of unknown function DUF971; KEGG: bmb:BruAb1_0965 hypothetical protein.
 
     0.411
Oant_0994
PFAM: Methyltransferase type 11; KEGG: bmb:BruAb1_1962 hypothetical protein.
  
 
   0.401
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.