STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3321PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_0330 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)    
Predicted Functional Partners:
Oant_3322
KEGG: rpb:RPB_1036 hypothetical protein.
 
    0.871
Oant_3320
PFAM: extracellular solute-binding protein family 5; KEGG: rpa:RPA2641 putative ABC transporter oligopeptide-binding protein.
 
     0.623
Oant_2588
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bme:BMEI1250 short chain dehydrogenase.
 
    0.552
Oant_3315
KEGG: zmo:ZMO0313 L-2-amino-thiazoline-4-carboxylic acid hydrolase.
 
     0.535
Oant_3316
PFAM: FAD dependent oxidoreductase; KEGG: rpa:RPA2638 possible oxidoreductase.
 
     0.488
Oant_2101
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_1537 short-chain dehydrogenase/reductase SDR.
 
    0.471
Oant_3319
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2013 binding-protein-dependent transport systems inner membrane component.
 
     0.438
Oant_0416
KEGG: mes:Meso_2115 hypothetical protein.
  
    0.419
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.