STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3363PFAM: Endoribonuclease L-PSP; KEGG: dsy:DSY2002 hypothetical protein. (136 aa)    
Predicted Functional Partners:
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bms:BRA0446 PilB-related protein.
  
 
 0.648
Oant_3874
PFAM: NMT1/THI5 like domain protein; KEGG: vei:Veis_3143 perplasmic binding protein of ABC transporter.
  
     0.556
Oant_3873
PFAM: FAD linked oxidase domain protein; KEGG: vei:Veis_3144 FAD linked oxidase domain protein.
  
     0.493
Oant_3872
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: vei:Veis_3139 amidohydrolase 3.
 
    0.445
Oant_3869
PFAM: Creatininase; KEGG: vei:Veis_3147 creatininase.
 
     0.443
Oant_3365
PFAM: TOBE domain protein; KEGG: rpb:RPB_0855 molybdenum-pterin binding protein.
   
   0.440
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
  0.414
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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