STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3421PFAM: protein of unknown function DUF112 transmembrane; KEGG: rle:RL3889 putative transmembrane protein. (502 aa)    
Predicted Functional Partners:
Oant_3423
PFAM: Uncharacterized protein UPF0065; KEGG: sme:SMb20025 hypothetical protein.
  
 0.933
Oant_3422
PFAM: protein of unknown function DUF1468; KEGG: sme:SMb20026 hypothetical protein.
 
  
 0.912
Oant_0664
PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0335 hypothetical protein.
 
  
 0.867
Oant_3917
PFAM: Uncharacterized protein UPF0065; KEGG: mes:Meso_3313 uncharacterized protein UPF0065.
 
  
 0.867
Oant_3098
PFAM: Uncharacterized protein UPF0065; KEGG: sme:SMb20771 hypothetical protein.
 
  
 0.866
Oant_3918
KEGG: sme:SMb20725 putative tricarboxylic transport membrane protein.
 
  
 0.604
Oant_3418
KEGG: sme:SMc02591 hypothetical protein.
       0.516
Oant_3419
KEGG: sme:SMc02592 hypothetical protein.
       0.516
Oant_3420
KEGG: sme:SMc02593 hypothetical protein.
       0.516
Oant_3099
KEGG: sme:SMb20770 hypothetical protein.
  
  
 0.457
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.