STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3436TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: sme:SMb21315 putative protein secretion protein, HlyD family membrane fusion protein, secretes ExpE1. (471 aa)    
Predicted Functional Partners:
Oant_3437
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb21316 putative ABC transporter protein, fused ATP-binding and membrane-spanning components, secretes ExpE1.
  
 0.954
Oant_3435
PFAM: Hemolysin-type calcium-binding region; KEGG: sme:SMb21314 putative secreted calcium-binding protein.
 
  
 0.863
Oant_3974
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:RL0623 putative transmembrane component of ABC transporter.
  
 0.805
Oant_2167
PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: pde:Pden_4346 ABC transporter related.
 
 
 0.801
Oant_2786
PFAM: Hemolysin-type calcium-binding region; KEGG: sme:SMa2111 hypothetical protein.
 
  
 0.763
Oant_2243
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bmb:BruAb1_0954 outer membrane efflux family protein.
 
 
 0.669
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.665
macB-2
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.665
Oant_3439
PFAM: glycosyl transferase group 1; KEGG: sme:SMb21318 putative glycosyltransferase, forming alpha-glycosyl linkages protein.
 
   
 0.619
Oant_3560
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpb:RPB_2240 RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.590
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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