STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3438PFAM: regulatory protein MarR; KEGG: sme:SMb21317 transcriptional activator of exopolysaccharide II synthesis, MarR family protein. (189 aa)    
Predicted Functional Partners:
Oant_1697
KEGG: sme:SMc03832 conserved hypothetical signal peptide protein.
  
     0.716
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.696
Oant_3439
PFAM: glycosyl transferase group 1; KEGG: sme:SMb21318 putative glycosyltransferase, forming alpha-glycosyl linkages protein.
       0.646
Oant_0091
KEGG: bmb:BruAb1_0078 hypothetical protein.
  
     0.615
Oant_3970
KEGG: bmb:BruAb2_0443 hypothetical protein.
  
     0.598
Oant_3428
KEGG: ter:Tery_3237 hypothetical protein.
 
     0.551
Oant_3430
KEGG: sme:SMb21309 hypothetical protein.
 
     0.551
Oant_3437
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb21316 putative ABC transporter protein, fused ATP-binding and membrane-spanning components, secretes ExpE1.
     
 0.520
Oant_2131
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.518
Oant_3436
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: sme:SMb21315 putative protein secretion protein, HlyD family membrane fusion protein, secretes ExpE1.
  
    0.498
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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