STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3712PFAM: TrkA-N domain protein; Saccharopine dehydrogenase; KEGG: bmb:BruAb2_0593 hypothetical protein. (367 aa)    
Predicted Functional Partners:
Oant_3713
Putative transcriptional regulator, AsnC family; PFAM: regulatory protein AsnC/Lrp family; Helix-turn-helix type 11 domain protein; KEGG: bms:BRA0634 transcriptional regulator, AsnC family.
 
     0.698
Oant_1459
PFAM: aldehyde dehydrogenase; KEGG: bms:BRA0908 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
 
  
 0.556
Oant_3711
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: bmb:BruAb2_0594 amino acid ABC transporter, periplasmic amino acid-binding protein.
       0.425
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.