STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3806Putative transcriptional regulator; KEGG: bms:BRA0679 hypothetical protein. (202 aa)    
Predicted Functional Partners:
Oant_3805
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: atc:AGR_L_685 hypothetical ABC transporter ATP-binding protein YliA.
       0.757
Oant_3807
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bme:BMEII0602 N-methylhydantoinase (ATP-hydrolyzing).
 
     0.732
Oant_3804
PFAM: extracellular solute-binding protein family 5; KEGG: atc:AGR_L_687 oligopeptide ABC transporter (oligopeptide-binding protein).
       0.639
Oant_3801
KEGG: atc:AGR_L_695 hypothetical protein.
       0.595
Oant_3802
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_692 oligopeptide ABC transporter (permease).
       0.575
Oant_3803
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_689 oligopeptide ABC transporter (permease).
       0.575
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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