STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_3836Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bme:BMEII0573 transcriptional regulator, RpiR family. (277 aa)    
Predicted Functional Partners:
Oant_3837
PFAM: PfkB domain protein; KEGG: bmb:BruAb2_0517 IolC myo-catabolism protein.
 
     0.882
Oant_3838
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bms:BRA0714 TPP-requiring enzyme IolD; Belongs to the TPP enzyme family.
 
   
 0.864
Oant_3840
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bme:BMEII0569 iolB protein.
 
   
 0.861
Oant_3839
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bmb:BruAb2_0515 IolE protein.
 
     0.851
Oant_3835
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bmb:BruAb2_0519 IdhA, myo-inositol 2-dehydrogenase.
 
     0.752
Oant_0624
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN3285 transcriptional regulator, RipR family.
  
     0.665
Oant_1831
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bmb:BruAb1_1340 sugar ABC transporter, periplasmic sugar-binding protein.
 
  
 0.485
Oant_3834
PFAM: protein of unknown function DUF1612; KEGG: bms:BRA0710 hypothetical protein.
       0.454
Oant_2801
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; KEGG: rle:RL4211 putative transcriptional regulator.
  
     0.424
Oant_1833
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmb:BruAb1_1337 sugar ABC transporter, ATP-binding protein.
  
     0.416
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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