STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4058KEGG: mes:Meso_0991 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Oant_4057
PFAM: Tetratricopeptide TPR_4; Helix-turn-helix type 11 domain protein; KEGG: mes:Meso_0992 tetratricopeptide TPR_4.
 
     0.950
Oant_4055
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: mes:Meso_0994 protein of unknown function DUF899, thioredoxin-like.
 
     0.884
Oant_3485
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rle:RL1304 hypothetical protein.
 
     0.751
Oant_4056
KEGG: mes:Meso_0993 hypothetical protein.
       0.596
Oant_3398
KEGG: rle:RL3236 putative transmembrane protein.
  
     0.529
Oant_3504
PFAM: protein of unknown function DUF1486; KEGG: rde:RD1_0829 taurine dehydrogenase small.
 
     0.481
Oant_1431
PFAM: protein of unknown function DUF886; KEGG: bme:BMEII0364 hypothetical protein.
  
     0.440
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.