STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4087PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpb:RPB_2695 TonB-dependent receptor. (694 aa)    
Predicted Functional Partners:
Oant_4086
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pau:PA14_10190 putative transcriptional regulator.
 
    0.738
Oant_4088
KEGG: pae:PA4155 hypothetical protein.
 
    0.663
Oant_0244
KEGG: ecs:ECs1975 hypothetical protein.
    
 
 0.659
Oant_1494
Hypothetical protein; KEGG: cvi:CV0429 probable bacteriophage tail fiber protein.
    
 
 0.659
Oant_3940
KEGG: bms:BRA0772 hypothetical protein.
    
 
 0.659
Oant_4197
KEGG: bmb:BruAb2_1080 hypothetical MotC chemotaxis protein.
    
 
 0.659
Oant_1256
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.562
Oant_3474
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sme:SMc01611 putative ferrichrome-iron receptor precursor protein.
  
  
 0.555
Oant_2775
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rpa:RPA3281 probable FecR, iron siderophore sensor protein.
 
  
 0.531
Oant_3260
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1820 TonB-dependent receptor.
 
  
 0.514
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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