STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4092PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sil:SPO1720 TRAP dicarboxylate transporter, DctQ subunit. (166 aa)    
Predicted Functional Partners:
Oant_4093
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_1049 TRAP dicarboxylate transporter, DctM subunit.
 
 
 0.949
Oant_4091
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pde:Pden_5066 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.933
Oant_4094
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: atc:AGR_L_3122 hypothetical protein.
 
    0.896
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
     0.832
Oant_4096
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sil:SPO1724 D-mannonate oxidoreductase.
       0.701
Oant_4090
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sil:SPO1722 transcriptional regulator, GntR family.
 
     0.699
Oant_3765
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: atc:AGR_C_4976 hypothetical protein.
 
  
 0.628
Oant_3902
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ecv:APECO1_2069 C4-dicarboxylate-binding protein.
 
  
 0.590
Oant_3764
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMa0250 conserved hypothetical DedA-like protein.
 
 
 0.560
Oant_3900
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ecv:APECO1_2071 C4-dicarboxylate transport system permease large protein.
 
 
 0.554
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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