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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4100TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mes:Meso_4068 TRAP transporter, 4TM/12TM fusion protein. (701 aa)    
Predicted Functional Partners:
Oant_4099
PFAM: Domain of unknown function DUF1850; KEGG: rsp:RSP_1615 hypothetical protein.
 
    0.952
Oant_4101
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rpb:RPB_4331 TRAP transporter solute receptor, TAXI family.
 
    0.913
Oant_2429
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bmb:BruAb1_1199 outer membrane protein, hypothetical.
 
    0.840
Oant_3901
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ecv:APECO1_2070 C4-dicarboxylate transport system permease small protein.
  
     0.521
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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