STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4103RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bmb:BruAb2_0021 RNA polymerase sigma-70 factor, ECF subfamily. (189 aa)    
Predicted Functional Partners:
Oant_4102
PFAM: protein of unknown function DUF1109; KEGG: bmb:BruAb2_0022 hypothetical protein.
 
   
 0.956
Oant_4105
KEGG: bmb:BruAb2_0019 HupC/HyaC/HydC family protein.
 
     0.580
Oant_4106
PFAM: oxidoreductase molybdopterin binding; KEGG: bms:BRA0018 oxidoreductase, molybdopterin-binding.
 
   
 0.558
Oant_4104
TIGRFAM: Pentapeptide MXKDX repeat protein; KEGG: bme:BMEII0073 hypothetical protein.
     
 0.551
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.500
Oant_3398
KEGG: rle:RL3236 putative transmembrane protein.
  
 
 0.454
Oant_2775
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rpa:RPA3281 probable FecR, iron siderophore sensor protein.
  
 
 0.444
Oant_0409
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bms:BR0316 sensor histidine kinase/response regulator.
  
  
 0.424
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.411
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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