STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4239KEGG: bmb:BruAb2_0104 hypothetical protein. (400 aa)    
Predicted Functional Partners:
Oant_4241
KEGG: bmf:BAB2_0101 hypothetical protein.
 
     0.947
Oant_4237
PFAM: O-antigen polymerase; KEGG: bms:BRA0108 exopolysaccharide production protein, putative.
 
  
 0.872
Oant_4238
PFAM: glycosyl transferase family 2; KEGG: bme:BMEII1128 succinoglycan biosynthesis protein ExoM.
 
    0.870
Oant_4240
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: bms:BRA0104 glycosyl transferase, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
 
 
 0.855
Oant_2967
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bmb:BruAb2_0379 hypothetical epimerase/dehydratase family protein.
 
    0.749
Oant_3960
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bmb:BruAb2_0100 hypothetical polysaccharide accessory transport protein.
 
  
 0.741
Oant_1349
KEGG: bmb:BruAb2_0972 hypothetical membrane protein.
  
     0.701
Oant_2966
KEGG: bmb:BruAb2_0378 hypothetical membrane protein.
  
     0.680
Oant_2682
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bmb:BruAb1_0599 hypothetical peptidoglycan-binding protein.
  
    0.641
Oant_2680
KEGG: bms:BR0580 hypothetical protein.
  
     0.592
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.