STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4243PFAM: lipopolysaccharide biosynthesis protein; KEGG: bms:BRA0101 polysaccharide accessory transport protein, putative. (595 aa)    
Predicted Functional Partners:
Oant_3370
PFAM: polysaccharide export protein; KEGG: bms:BRA0417 exopolysaccharide biosynthesis protein Bme11.
 
 
 0.898
Oant_2509
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: bms:BR0781 bacterial sugar transferase.
 
  
 0.895
Oant_2506
PFAM: polysaccharide export protein; KEGG: bmb:BruAb1_0798 capsule polysaccharide export protein, hypothetical.
 
 
 0.887
Oant_4237
PFAM: O-antigen polymerase; KEGG: bms:BRA0108 exopolysaccharide production protein, putative.
 
  
 0.619
Oant_4270
KEGG: bms:BRA0072 hypothetical protein.
 
   
 0.602
Oant_4239
KEGG: bmb:BruAb2_0104 hypothetical protein.
 
  
 0.527
Oant_4238
PFAM: glycosyl transferase family 2; KEGG: bme:BMEII1128 succinoglycan biosynthesis protein ExoM.
 
  
 0.504
Oant_4241
KEGG: bmf:BAB2_0101 hypothetical protein.
  
     0.486
Oant_1721
KEGG: bmb:BruAb1_1447 hypothetical protein.
  
     0.457
Oant_2715
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; KEGG: bme:BMEII0900 mannose-6-phosphate isomerase / mannose-1-phosphate guanylyl transferase (GDP).
  
  
 0.442
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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