STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4263PFAM: homospermidine synthase; KEGG: bmb:BruAb2_0078 homospermidine synthase. (481 aa)    
Predicted Functional Partners:
Oant_4245
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bmb:BruAb2_0099 decarboxylase, ornithine/DAP/arginine decarboxylase family 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.645
Oant_4264
Hypothetical protein.
       0.635
Oant_4260
TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bmb:BruAb2_0081 PepF, oligoendopeptidase F.
       0.494
Oant_4261
TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: bmb:BruAb2_0080 para-aminobenzoate synthase, component I.
       0.491
Oant_0177
PFAM: protein of unknown function DUF540; KEGG: bmb:BruAb1_0163 hypothetical protein.
  
     0.490
Oant_4262
KEGG: bms:BRA0079 4-amino-4-deoxychorismate lyase.
       0.488
Oant_4265
KEGG: bmb:BruAb2_0077 lipoprotein Omp10.
       0.422
Oant_2624
KEGG: bmb:BruAb1_0682 hypothetical protein.
  
     0.401
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.