STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4300TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mes:Meso_2840 phage SPO1 DNA polymerase-related protein. (207 aa)    
Predicted Functional Partners:
Oant_2659
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bmb:BruAb1_0639 phage SPO1 DNA polymerase-related protein.
  
  
 
0.923
Oant_2639
PFAM: Uracil-DNA glycosylase superfamily; KEGG: bmb:BruAb1_0665 SPO1 DNA polymerase-related protein.
  
  
 0.919
Oant_4302
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rsp:RSP_2681 sigma factor, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.643
Oant_4301
KEGG: ret:RHE_CH02072 hypothetical protein.
       0.634
Oant_4303
KEGG: ret:RHE_PF00074 putative two-component response regulator protein.
 
     0.498
Oant_4304
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_1505 short-chain dehydrogenase/reductase SDR.
 
     0.452
Oant_4299
KEGG: sme:SMb20087 hypothetical protein.
       0.433
Oant_0761
PFAM: peptidase M22 glycoprotease; KEGG: bmb:BruAb1_2124 protease, hypothetical.
  
    0.412
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.