Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Oant_4331Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bja:bsr0038 probable transcriptional regulator. (88 aa)    
Predicted Functional Partners:
Oant_0669
PFAM: helix-turn-helix domain protein; KEGG: pde:Pden_3368 transcriptional regulator, XRE family.
  
     0.750
Oant_0668
Putative transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sil:SPOA0085 DNA-binding protein, putative.
 
  
 0.740
Oant_4330
Hypothetical protein.
       0.545
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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