STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4353TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rle:pRL100225 putative amidohydrolase. (399 aa)    
Predicted Functional Partners:
Oant_4352
PFAM: GCN5-related N-acetyltransferase; KEGG: rle:pRL100226 putative acetyltransferase.
 
  
 0.794
Oant_4354
KEGG: rle:pRL100224 putative nitrilotriacetate monooxygenase component.
  
    0.759
Oant_4351
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00007 probable amino acid ABC transporter, ATP-binding protein.
  
    0.683
Oant_4350
PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00008 probable amino acid ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
  
    0.559
Oant_4349
PFAM: extracellular solute-binding protein family 3; KEGG: rle:pRL100229 putative substrate-binding ABC transport protein.
  
    0.419
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.