STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4378PFAM: protein of unknown function DUF59; KEGG: bmb:BruAb2_0924 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Oant_2254
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bms:BR0932 ABC transporter, ATP-binding protein.
 
  
 0.804
Oant_4376
KEGG: bms:BRA0253 hypothetical protein.
       0.787
Oant_2157
PFAM: nitrogen-fixing NifU domain protein; KEGG: bmb:BruAb1_1079 NifU-related protein.
 
    0.786
Oant_4377
KEGG: bmb:BruAb2_0925 hypothetical protein.
       0.779
Oant_2253
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bms:BR0933 hypothetical protein.
 
   
 0.761
Oant_2255
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bmb:BruAb1_0940 hypothetical protein.
 
   
 0.757
Oant_2252
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bms:BR0934 aminotransferase, class V; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.729
Oant_4375
KEGG: bms:BRA0252 hypothetical protein.
       0.678
Oant_1711
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bme:BMEI0548 flavohemoprotein.
  
  
 0.496
Oant_4379
TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bmb:BruAb2_0919 copper-containing nitrite reductase; Belongs to the multicopper oxidase family.
       0.424
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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