STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4429TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb20036 putative ABC transporter periplasmic solute-binding protein. (338 aa)    
Predicted Functional Partners:
Oant_4430
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ret:RHE_PC00212 probable C4-dicarboxylate transport system, permease protein.
  
 0.917
Oant_4431
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sme:SMb20034 putative ABC transporter integral membrane protein.
 
  
 0.914
Oant_4093
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_1049 TRAP dicarboxylate transporter, DctM subunit.
  
 0.828
Oant_3764
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMa0250 conserved hypothetical DedA-like protein.
  
 0.827
Oant_3900
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ecv:APECO1_2071 C4-dicarboxylate transport system permease large protein.
  
 0.821
Oant_3763
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sme:SMa0249 hypothetical protein.
 
  
 0.816
Oant_3901
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ecv:APECO1_2070 C4-dicarboxylate transport system permease small protein.
 
  
 0.789
Oant_3879
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pub:SAR11_1292 TrapT family.
     0.674
Oant_0445
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bmb:BruAb1_0370 TRAP dicarboxylate transporter, DctM subunit, hypothetical.
     0.625
Oant_4428
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PC00215 putative 4-hydroxyphenylpyruvate dioxygenase protein.
  
    0.602
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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