STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_4456PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: bmb:BruAb2_1138 RepA, replication protein RepA. (398 aa)    
Predicted Functional Partners:
Oant_4455
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: bmb:BruAb2_1139 RepB, replication protein RepB; Belongs to the ParB family.
 
 
 0.963
Oant_4454
PFAM: replication protein C; KEGG: bmb:BruAb2_0001 RepC, replication initiation protein RepC.
 
   
 0.872
Oant_0862
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: bms:BR2058 chromosome partitioning protein ParB; Belongs to the ParB family.
 
 
 0.769
Oant_0675
PFAM: VIRB2 type IV secretion fmaily protein; KEGG: sme:SMa1319 VirB2 type IV secretion protein.
  
     0.643
Oant_3151
KEGG: nwi:Nwi_2123 hypothetical protein.
 
 
 0.616
Oant_1511
PFAM: ParB domain protein nuclease; KEGG: mgm:Mmc1_1249 ParB domain protein nuclease.
  
 
 0.543
Oant_1826
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bmb:BruAb1_1345 hypothetical iron compound TonB-dependent receptor.
    
 
 0.536
Oant_1490
KEGG: pau:PA14_08090 putative phage tail tube protein.
  
     0.428
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.416
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
 
    0.408
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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