STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0189PFAM: Abortive infection protein; KEGG: tga:TGAM_0024 zinc-dependant protease, putative. (212 aa)    
Predicted Functional Partners:
Aboo_0229
PFAM: nitroreductase; KEGG: pfu:PF0715 NAD(P)H oxidase.
  
  
 0.597
Aboo_0173
PFAM: ABC-2 type transporter; KEGG: tpe:Tpen_1474 ABC-2 type transporter.
  
  
 0.592
Aboo_0258
PFAM: Exosortase EpsH-related; KEGG: tga:TGAM_0012 hypothetical protein.
   
    0.472
rfcS
Replication factor C; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.
       0.469
Aboo_0314
PFAM: peptidase M50; KEGG: tac:Ta1274 sterol-regulatory element-binding proteins intramembrane protease related protein.
  
  
 0.433
Aboo_0190
Hypothetical protein; KEGG: mvu:Metvu_1510 PKD domain containing protein.
       0.432
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.