STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0218KEGG: bha:BH3587 pyrophosphatase PpaX; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase. (206 aa)    
Predicted Functional Partners:
Aboo_0569
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dka:DKAM_0032 phosphatases-like protein.
 
  
 0.711
Aboo_0217
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cdl:CDR20291_2463 putative short chain dehydrogenase.
   
 
 0.687
Aboo_0214
KEGG: mfe:Mefer_0666 putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.
       0.658
Aboo_0215
PFAM: 4-vinyl reductase 4VR; KEGG: kcr:Kcr_0254 hydrocarbon binding protein.
       0.658
Aboo_0216
KEGG: mae:Maeo_0695 roadblock/LC7 family protein.
       0.658
Aboo_0213
Hypothetical protein; KEGG: helicase.
       0.490
Aboo_0497
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: afu:AF2109 signal-transducing histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; GAF domain protein.
  
  
 0.460
Aboo_1080
KEGG: pab:PAB1316 2-haloalkanoic acid dehalogenase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
 
 
 0.413
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.