STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0249PFAM: glycosyl transferase group 1; KEGG: pth:PTH_0390 glycosyltransferase. (387 aa)    
Predicted Functional Partners:
Aboo_0251
PFAM: glycosyl transferase group 1; KEGG: gvi:gll1176 hypothetical protein.
  
     0.631
Aboo_0248
KEGG: hde:HDEF_0195 hypothetical protein.
       0.586
Aboo_0255
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.525
Aboo_0253
PFAM: polysaccharide biosynthesis protein; KEGG: pho:PH0421 lipopolysaccharide O-side chain biosynthesis protein (O-antigen transporter).
 
  
 0.502
Aboo_0240
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: pho:PH0429 VI polysaccharide biosynthesis protein; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
 
  
 0.495
Aboo_0277
PFAM: glycosyl transferase group 1; KEGG: mtp:Mthe_1676 glycosyl transferase, group 1.
  
     0.484
Aboo_0256
KEGG: pab:PAB0785 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
 
  
 0.483
Aboo_0221
PFAM: Protein of unknown function DUF1749; KEGG: hau:Haur_1576 hypothetical protein.
   
 
 0.478
Aboo_0617
PFAM: peptidase S15; KEGG: tga:TGAM_1697 hydrolase, alpha/beta superfamily.
   
 
 0.478
Aboo_0279
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mbu:Mbur_2037 NAD-dependent epimerase/dehydratase.
 
  
 0.458
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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