STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0279PFAM: NAD-dependent epimerase/dehydratase; KEGG: mbu:Mbur_2037 NAD-dependent epimerase/dehydratase. (285 aa)    
Predicted Functional Partners:
Aboo_0148
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mma:MM_1134 UDP-glucose 4-epimerase.
 
  
 
0.920
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: tko:TK1254 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.792
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
   
 0.782
Aboo_1507
PFAM: ribosomal protein S14; KEGG: tac:Ta1257 30S ribosomal protein S14P.
  
 0.780
Aboo_1517
KEGG: pto:PTO0644 30S ribosomal protein S19P; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15.
   
 0.778
Aboo_1515
TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; KEGG: mja:MJ0461 30S ribosomal protein S3P; SMART: KH domain protein.
   
 0.771
rpl7ae
Ribosomal protein L7Ae/L30e/S12e/Gadd45; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
   
 0.769
Aboo_1512
KEGG: mka:MK1217 30S ribosomal protein S17P; TIGRFAM: ribosomal protein S17P; PFAM: ribosomal protein S17.
   
 0.767
Aboo_1509
KEGG: mth:MTH15 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
   
 0.766
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
  
 0.759
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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