STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0341PFAM: protein of unknown function DUF82; KEGG: kol:Kole_0008 protein of unknown function DUF82. (158 aa)    
Predicted Functional Partners:
pelA
Translation factor pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity.
       0.812
Aboo_0338
hydroxymethylglutaryl-CoA synthase; KEGG: tac:Ta1455 hypothetical protein; TIGRFAM: hydroxymethylglutaryl-CoA synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; Hydroxymethylglutaryl-coenzyme A synthase domain.
       0.605
Aboo_0339
KEGG: mst:Msp_0116 acetyl-CoA acetyltransferase.
       0.605
Aboo_0340
PFAM: protein of unknown function DUF35; KEGG: tvo:TVN0132 nucleic-acid-binding protein.
       0.605
Aboo_0336
PFAM: SufBD protein; KEGG: ton:TON_0531 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.431
Aboo_0337
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: ton:TON_0530 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; SMART: AAA ATPase.
       0.431
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.