STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0399KEGG: pto:PTO0555 putative ATPase RIL; PFAM: ABC transporter related; metal-binding domain in RNase L inhibitor, RLI; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SMART: AAA ATPase. (586 aa)    
Predicted Functional Partners:
prf1
Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
  
 
 0.998
rps28e
PFAM: Ribosomal protein S28e; KEGG: pto:PTO1281 30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
   
   0.963
rps6e
PFAM: Ribosomal protein S6e; KEGG: rci:LRC420 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.950
Aboo_1515
TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; KEGG: mja:MJ0461 30S ribosomal protein S3P; SMART: KH domain protein.
   
 
 0.940
rps24e
PFAM: Ribosomal protein S24e; KEGG: hma:rrnAC2488 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
   0.935
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: tko:TK1254 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.921
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
 
 0.910
rps15
PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG: ton:TON_0517 30S ribosomal protein S15P.
 
 
 0.891
Aboo_1517
KEGG: pto:PTO0644 30S ribosomal protein S19P; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15.
   
 
 0.879
Aboo_1509
KEGG: mth:MTH15 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
  
 
 0.876
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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