STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0402KEGG: tko:TK2134 Lrp/AsnC family transcription regulator; PFAM: Transcription regulator, AsnC-type-like; Helix-turn-helix type 11 domain protein; SMART: Transcription regulator, AsnC-type. (143 aa)    
Predicted Functional Partners:
Aboo_0403
KEGG: ctc:CTC02323 sensory transduction protein kinase; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; PAS domain containing protein; histidine kinase A domain protein.
     
 0.645
hel308
DEAD/DEAH box helicase domain protein; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.
       0.625
Aboo_0400
ERCC4 domain protein; KEGG: afu:AF2418 DNA repair protein, putative; PFAM: ERCC4 domain protein; helix-hairpin-helix motif; SMART: ERCC4 domain protein; Helix-hairpin-helix DNA-binding class 1.
       0.534
Aboo_0399
KEGG: pto:PTO0555 putative ATPase RIL; PFAM: ABC transporter related; metal-binding domain in RNase L inhibitor, RLI; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SMART: AAA ATPase.
       0.470
Aboo_0398
KEGG: pto:PTO0554 hypothetical protein.
       0.464
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.