STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0634KEGG: tsi:TSIB_1066 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit. (373 aa)    
Predicted Functional Partners:
Aboo_0635
KEGG: tvo:TVN0796 glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase.
     
 0.827
Aboo_0638
PFAM: sugar isomerase (SIS); KEGG: pcl:Pcal_0808 hexulose-6-phosphate isomerase.
  
   0.646
Aboo_1260
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: iho:Igni_0580 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
 
   
0.633
fhs
KEGG: chy:CHY_2385 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.624
Aboo_1421
KEGG: tko:TK1966 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region.
  
  
 0.608
Aboo_0128
KEGG: pfu:PF0939 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein.
  
  
 0.606
Aboo_0200
KEGG: mfe:Mefer_0041 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein.
  
  
 0.606
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.
  
  
 0.606
Aboo_0686
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase.
     
 0.598
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: tko:TK1254 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
    0.564
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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