STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0654RecA-superfamily ATPase implicated in signal transduction-like protein; KEGG: ayw:AYWB_353 hypothetical protein. (593 aa)    
Predicted Functional Partners:
Aboo_0653
Like-Sm ribonucleoprotein core; KEGG: tvo:TVN1075 small nuclear ribonucleoprotein (snRNP)-like protein; PFAM: Like-Sm ribonucleoprotein core; SMART: Sm-family ribonucleoprotein.
 
     0.806
Aboo_0655
TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: mac:MA3705 O-sialoglycoprotein endopeptidase/protein kinase; PFAM: peptidase M22 glycoprotease; aminoglycoside phosphotransferase.
       0.762
Aboo_0656
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
       0.762
Aboo_0651
KEGG: pab:PAB1205 methyltransferase related protein.
 
     0.639
Aboo_0652
KEGG: tac:Ta0928 hypothetical protein.
       0.628
Aboo_0650
KEGG: tvo:TVN0271 hypothetical protein.
       0.560
Aboo_0010
KEGG: tvo:TVN1212 hypothetical protein.
  
     0.498
Aboo_0586
Hypothetical protein; KEGG: msi:Msm_1203 zinc-dependent protease.
  
     0.493
Aboo_0649
PFAM: GCN5-related N-acetyltransferase; KEGG: tsi:TSIB_1072 N-acetyltransferase, GNAT family.
 
     0.491
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.