STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0767UbiD family decarboxylase; KEGG: pab:PAB1798 hypothetical protein; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein. (411 aa)    
Predicted Functional Partners:
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
  
 0.941
Aboo_0768
PFAM: PP-loop domain protein; KEGG: afu:AF1321 hypothetical protein.
     
 0.749
Aboo_0766
PFAM: transposase IS4 family protein; KEGG: mpl:Mpal_2299 transposase IS4 family protein.
       0.613
Aboo_0771
Geranylgeranylglycerol-phosphate geranylgeranyltransferase; KEGG: pto:PTO0182 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; PFAM: UbiA prenyltransferase.
     
 0.587
Aboo_0769
KEGG: pto:PTO0872 hypothetical protein.
       0.526
Aboo_0849
PFAM: protein of unknown function DUF521; KEGG: pho:PH0354 hypothetical protein.
 
     0.493
Aboo_0848
PFAM: protein of unknown function DUF126; KEGG: ton:TON_0513 hypothetical protein.
 
     0.432
Aboo_0764
PFAM: RNA polymerase Rpb4; KEGG: afu:AF1530 hypothetical protein.
       0.415
rpl21e
PFAM: Ribosomal protein L21e; KEGG: mka:MK1660 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
       0.415
Aboo_0763
PFAM: Protein of unknown function DUF655; KEGG: tvo:TVN0314 RNA-binding protein.
       0.407
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.