STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Aboo_0770Geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. (245 aa)    
Predicted Functional Partners:
Aboo_0771
Geranylgeranylglycerol-phosphate geranylgeranyltransferase; KEGG: pto:PTO0182 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; PFAM: UbiA prenyltransferase.
 
  
 0.995
egsA
3-dehydroquinate synthase; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.
     
 0.943
Aboo_0772
PFAM: Radical SAM domain protein; KEGG: mac:MA3711 hypothetical protein.
       0.553
Aboo_1442
PFAM: Glycosyltransferase 28 domain; KEGG: mtp:Mthe_0759 hypothetical protein.
  
     0.535
Aboo_0773
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pto:PTO0824 hydrogenase 4 subunit B.
       0.479
Aboo_0774
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sin:YN1551_1655 NADH ubiquinone oxidoreductase 20 kDa subunit.
       0.479
Aboo_0775
KEGG: mse:Msed_1429 NADH-ubiquinone oxidoreductase, chain 49kDa.
       0.479
Aboo_0776
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sin:YN1551_1657 NADH dehydrogenase (quinone).
       0.479
Aboo_0777
Hydrogenase 4 membrane component (E)-like protein; KEGG: pto:PTO0828 hypothetical protein.
       0.479
Aboo_0778
KEGG: sid:M164_1185 formate hydrogenlyase subunit 4 (HycD).
       0.479
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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