STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0772PFAM: Radical SAM domain protein; KEGG: mac:MA3711 hypothetical protein. (353 aa)    
Predicted Functional Partners:
Aboo_1186
PFAM: Protein of unknown function DUF373; KEGG: tvo:TVN1448 hypothetical protein.
 
     0.669
Aboo_0773
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pto:PTO0824 hydrogenase 4 subunit B.
       0.661
Aboo_0774
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sin:YN1551_1655 NADH ubiquinone oxidoreductase 20 kDa subunit.
       0.661
Aboo_0775
KEGG: mse:Msed_1429 NADH-ubiquinone oxidoreductase, chain 49kDa.
       0.661
Aboo_0776
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sin:YN1551_1657 NADH dehydrogenase (quinone).
       0.661
Aboo_0777
Hydrogenase 4 membrane component (E)-like protein; KEGG: pto:PTO0828 hypothetical protein.
       0.661
Aboo_0778
KEGG: sid:M164_1185 formate hydrogenlyase subunit 4 (HycD).
       0.661
Aboo_1195
KEGG: tga:TGAM_0512 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase), containing one PUA domain and 2 4Fe-4S binding domains; PFAM: phosphoadenosine phosphosulfate reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PUA domain containing protein; SMART: PUA domain containing protein.
  
     0.601
Aboo_0718
Transcriptional regulator, XRE family; KEGG: pto:PTO1517 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.590
Aboo_0943
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mbu:Mbur_1327 hypothetical protein.
  
     0.567
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.