STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aboo_0809PFAM: amidohydrolase; KEGG: tac:Ta1060m metal-dependent hydrolase. (398 aa)    
Predicted Functional Partners:
Aboo_0704
Methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
  
 
 0.922
Aboo_0309
KEGG: pto:PTO0613 spermidine synthase; TIGRFAM: spermidine synthase; PFAM: Spermine synthase.
  
  0.909
Aboo_0780
PFAM: purine or other phosphorylase family 1; KEGG: tsi:TSIB_1419 purine-nucleoside phosphorylase.
 
  
 0.699
Aboo_0504
Band 7 protein; KEGG: smr:Smar_0564 SPFH domain-containing protein/band 7 family protein; PFAM: band 7 protein; SMART: band 7 protein.
      0.652
Aboo_0810
KEGG: pfu:PF0213 hypothetical protein.
       0.586
Your Current Organism:
Aciduliprofundum boonei
NCBI taxonomy Id: 439481
Other names: A. boonei T469, Aciduliprofundum boonei DSM 19572, Aciduliprofundum boonei T469, Aciduliprofundum boonei str. T469, Aciduliprofundum boonei strain T469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.